Implements a Fellegi-Sunter probabilistic record linkage model that allows for missing data and the inclusion of auxiliary information.

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This includes functionalities to conduct a merge of two datasets under the Fellegi-Sunter model using the Expectation-Maximization algorithm. In addition, tools for preparing, adjusting, and summarizing data merges are included. Uses : adagiodata. No one has written a review of fastLink yet. Want to be the first? Write one now. Related packages: AmeliaCVThreshHardyWeinbergHmiscade4cateigenmodelexperimentltmmemiscmicemitoolsmixnormpanrandomForestsbgcopyaImputezooSNPassoc … 20 best matches, based on common tags.

Search for fastLink on googlegoogle scholarr-helpr-devel. Visit fastLink on R Graphical Manual. About crantastic. Like it? Hate it? Let us know at cranatic gmail. All crantastic content and data including user contributions are available under the CC Attribution-Share Alike 3. Packages Authors Reviews Tags.GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together.

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Cannot retrieve contributors at this time. Raw Blame History. Must be a subset of ' 'varnames' and must not be present in 'numeric. Must be a subset of 'varnames' ' and 'stringdist. Default is 0.

Default is. Default is 1 ' param cut. Default is 2. Default is NULL ' param w. Must range between 0 no weight on prior and 1 weight fully on prior.

To be used when 'pi. Must be present in 'varnames'. If provided, the exact-matching gender prior is used in the EM algorithm. Can be used when running the match on a random sample and applying to a larger dataset, or for out-of-sample ' prediction of matches. Parameter estimates will be applied to the matching patterns ' in 'dfA' and 'dfB'. If provided. Often provided when parameters have been ' estimated on a smaller sample, and the user wants to apply them to the full dataset. Default is TRUE.

Must be provided if reweight. Default is NULL. Default is 1e For instance, threshold. Please select only one matching metric for each variable. Setting 'estimate.

fastLink: Fast Probabilistic Record Linkage with Missing Data

Method should be one of 'jw', 'jaro', or 'lv'. Remember, jw. The resulting object may be very large.

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Ignoring prior information in estimation. Please check your variable classes. We recommend trying a lower threshold.These cookies are used to track visitors across websites. The intention is to display ads that are relevant and engaging for the users.

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Our Privacy Policy outlines how we use cookies and similar technologies. Our Cookie Policy provides you with detailed information about how we use cookies and how you may limit their use. Decline all Accept all Save.This page briefly summarizes several ongoing projects and provides hyperlinks to a more detailed page about each project, download software, and references for papers. Genetic linkage analysis is a statistical technique used to map genes and find the approximate locations of disease genes.

Follow the hyperlink to the MSA page to retrieve the paper and software. Richa Agarwala has developed software called PedHunter to query a genealogical database. Among the problems PedHunter solves is how best to connect a set of relatives with the same disease into a pedigree suitable for input to genetic linkage analysis.

R Packages

PedHunter is being used by other research groups to query other genealogical databases. Follow one of the two PedHunter hyperlinks to retrieve a paper and software.

fastlink r package

The software is designed to analyze data generated by a technique called comparative genomic hybridization, but it has also been used to analyze cytogenetic breakpoint data. The focus of the software is to infer tree models that relate genetic aberrations to tumor progression. Many improvements in version 3. The radiation hybrid mapping methods are based on: a new strategy to select framework markers, a known reduction from the radiation hybrid mapping problem to the traveling salesman problem, and using the existing software CONCORDE to solve large instances of the traveling salesman problem.

The map construction software was used at NCBI to construct dense human radiation hybrid maps. Follow the link on the right to learn more about these maps. The software has also been used to construct maps of the cat and the dog, which are described in some of the references, as well as other vertebrates. Christophe Hitte University of Rennes, France constructed the maps of the dog and independently compared our software to other, competing packages.Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.

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This package includes pricing function for selected American call options with underlying assets that generate payouts.

Animal track reconstruction for high frequency 2-dimensional 2D or 3-dimensional 3D movement data. A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns. Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density. Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.

Functions to fit cell volume distributions and thereby estimate cell growth rates and division times. Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it. Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.

Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics. An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model. Deconvolution density estimation with adaptive methods for a variable prone to measurement error.

Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute fill-in missing network links. Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment. Measuring functional diversity FD from multiple traits, and other tools for functional ecology.

Classifies implicit trading activity from market quotes and computes the probability of informed trading. Catalogues of resolution IV run 2-level fractional factorials up to 33 factors that do have 5-letter words. A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data. Interval estimation for the parameters of linear models with heteroskedasticity Wild Bootstrap.

R codes for estimating water retention and infiltration model parameters using experimental data. Work with Hyperspectral Data, i. Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival.

Threshold regression that fits the randomized drift inverse Gaussian distribution to survival data. Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions. Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" French. Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.The RStudio team contributes code to many R packages and projects.

R users are doing some of the most innovative and important work in science, education, and industry. If keeping up with the growing number of packages you use is challenging, consider RStudio Package Manager.

fastlink r package

The tidyverse is an opinionated collection of R packages designed for data science. All packages share an underlying philosophy and common APIs.

Create stunning multi-layered graphics with ease. Shiny makes it incredibly easy to build interactive web applications with R. R then generates a final document, in a wide variety of formats, that replaces the R code with its results.

Use flexdashboard to publish groups of related data visualizations as a dashboard. Tidymodels can be used to install and load tidyverse packages related to modeling and analysis. A consistent, simple and easy-to-use set of wrappers around the fantastic 'stringi' package.

Sparklyr is an R interface to Apache Spark, a fast and general engine for big data processing.

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Plumber enables you to convert your existing R code into web APIs by merely adding a couple of special comments. The reticulate package provides a comprehensive set of tools for interoperability between Python and R. Ursa Labs is an industry-funded development group specializing in open source data science tools. It is dedicated to advancing the state of the art in high-productivity, high-performance, cross-language software for data scientists.

fastlink r package

RStudio Cloud Do, share, teach and learn data science shinyapps. Open Source. Hosted Services. RStudio Cloud shinyapps. R Packages. Managing Packages If keeping up with the growing number of packages you use is challenging, consider RStudio Package Manager.

Project Site Link. Project GitHub Link. Project Paper Link. Databases using R Project Site Link.For more information on customizing the embed code, read Embedding Snippets. Man pages API Source code Must be a subset of ' 'varnames' and must not be present in 'numeric.

Must be a subset of 'varnames' ' and 'stringdist. Default is 0. Default is. Default is 1 ' param cut. Default is 2. Default is NULL ' param w. Must range between 0 no weight on prior and 1 weight fully on prior.

To be used when 'pi. Must be present in 'varnames'.

fastlink r package

If provided, the exact-matching gender prior is used in the EM algorithm. Can be used when running the match on a random sample and applying to a larger dataset, or for out-of-sample ' prediction of matches.

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Parameter estimates will be applied to the matching patterns ' in 'dfA' and 'dfB'. If provided. Often provided when parameters have been ' estimated on a smaller sample, and the user wants to apply them to the full dataset.

/Debug:FASTLINK for VS2015 Update 1

Default is TRUE. Must be provided if reweight. Default is NULL. Default is 1e


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